Response to the COVID-19 pandemic
As part of an MRC funded project "Mathematical modelling and adaptive control to inform real time decision making for the COVID-19 pandemic at the local, regional and national scale", our team at the Zeeman Institute:SBIDER (Systems Biology & Infectious Disease Epidemiology Research) at the University of Warwick used real time data on the UK SARS-CoV-2 outbreak to provide robust predictions, gauging the ability of a model to predict future epidemic behaviour.
The team includes Matt Keeling, Michael Tildesley, Louise Dyson, Ben Atkins and several colleagues in SBIDER. For further details on the research undertaken by members of the Zeeman Institute:SBIDER, contributing to the COVID-19 modelling response both in the UK and abroad, visit the SBIDER COVID-19 modelling response webpage.
I am also a participant of the Scientific Pandemic Influenza Group on Modelling (SPI-M). SPI-M has been reporting to the Scientific Advisory Group for Emergencies (SAGE), providing advice (based on infectious disease modelling and epidemiology) on scientific matters related to the UK’s response to the COVID-19 pandemic.
Listed below are associated peer-reviewed publications and preprints, split into nine broad themes (in alphabetical order): Contact tracing mobile apps, fitting to the UK outbreak, higher education, immune escape, precautionary breaks (circuit breakers), schools, vaccination, Variants of Concern (VOCs), workplaces.
Contact tracing mobile apps
- The effect of notification window length on the epidemiological impact of COVID-19 contact tracing mobile applications.
Trystan Leng, Edward M Hill, Matt J Keeling, Michael J Tildesley, Robin N Thompson. (2021)
medRxiv. doi:10.1101/2021.11.08.21266079.
Fitting to the UK outbreak
Predictions of COVID-19 dynamics in the UK: short-term forecasting and analysis of potential exit strategies
Matt J Keeling, Edward M Hill, Erin E Gorsich, Bridget Penman, Glen Guyver-Fletcher, Alex Holmes, Trystan Leng, Hector McKimm, Massimiliano Tamborrino, Louise Dyson, Michael J Tildesley. (2021)
PLoS Comput Biol, 17(1): e1008619. doi:10.1371/journal.pcbi.1008619.Fitting to the UK COVID-19 outbreak, short-term forecasts and estimating the reproductive number
Matt J Keeling, Louise Dyson, Glen Guyver-Fletcher, Alex Holmes, Malcolm G Semple, ISARIC4C Investigators, Michael J Tildesley, Edward M Hill. (2022)
Statistical Methods in Medical Research. doi:10.1177/09622802211070257.Short-term forecasts to inform the response to the COVID-19 epidemic in the UK
Sebastian Funk et al. (2020)
medRxiv. doi:10.1101/2020.11.11.20220962.Short-term Projections based on Early Omicron Variant Dynamics in England
Matt J Keeling, Ellen Brooks-Pollock, Robert J Challen, Leon Danon, Louise Dyson, Julia R Gog, Laura Guzman-Rincon, Edward M Hill, Lorenzo M Pellis, Jonathan M Read, Michael J Tildesley. (2021)
medRxiv. doi:10.1101/2021.12.30.21268307.Bayesian Estimation of real-time Epidemic Growth Rates using Gaussian Processes: local dynamics of SARS-CoV-2 in England
Laura Guzman-Rincon, Edward M Hill, Louise Dyson, Michael J Tildesley, Matt J Keeling. (2022)
medRxiv. doi:10.1101/2022.01.01.21268131.Comparison of the 2021 COVID-19 ‘Roadmap’ Projections against Public Health Data
Matt J Keeling, Louise Dyson, Michael J Tildesley, Edward M Hill, Sam Moore. (2022)
medRxiv. doi:10.1101/2022.03.17.22272535.
Higher education
Modelling SARS-CoV-2 transmission in a UK university setting
Edward M Hill, Benjamin D Atkins, Matt J Keeling, Michael J Tildesley, Louise Dyson. (2021)
Epidemics, 36: 100476. doi:10.1016/j.epidem.2021.100476.SARS-CoV-2 infection in UK university students: Lessons from September-December 2020 and modelling insights for future student return.
Jessica Enright*, Edward M Hill*, Helena B Stage, Kirsty J Bolton, Emily J Nixon, Emma Fairbanks, Maria L Tang, Ellen Brooks-Pollock, Louise Dyson, Chris J Budd, Rebecca B Hoyle, Lars Schewe, Julia R Gog, Michael J Tildesley. (2021)
Royal Society Open Science, 8(8): 210310. doi:10.1098/rsos.210310.
* denotes joint first authorsCoughs, Colds and “Freshers’ Flu” Survey in the University of Cambridge, 2007-2008
Ken TD Eames, Maria L Tang, Edward M Hill, Michael J Tildesley, Jonathan M Read, Matt J Keeling, Julia R Gog. (2021)
medRxiv. doi:10.1101/2021.03.31.21251220.
Immune escape
SARS-CoV-2 incidence and vaccine escape
Robin N Thompson, Edward M Hill, Julia R Gog. (2021)
Lancet Infectious Diseases, 21(7): 913-914. doi:10.1016/S1473-3099(21)00202-4.Vaccine escape in a heterogeneous population: insights for SARS-CoV-2 from a simple model
Julia R Gog, Edward M Hill, Leon Danon, Robin N Thompson. (2021)
Royal Society Open Science, 8(7): 210530. doi:10.1098/rsos.210530.
Precautionary breaks (circuit breakers)
Precautionary breaks: Planned, limited duration circuit breaks to control the prevalence of SARS-CoV-2 and the burden of COVID-19 disease
Matt J Keeling, Glen Guyver-Fletcher, Alex Holmes, Louise Dyson, Michael J Tildesley, Edward M Hill, Graham F Medley. (2021)
Epidemics, 37: 100526. doi:10.1016/j.epidem.2021.100526.Optimal health and economic impact of non-pharmaceutical intervention measures prior and post vaccination in England: a mathematical modelling study
Michael J Tildesley, Anna Vassall, Steven Riley, Mark Jit, Frank Sandmann, Edward M Hill, Robin N Thompson, Benjamin D Atkins, John Edmunds, Louise Dyson, Matt J Keeling. (2021)
medRxiv. doi:10.1101/2021.04.22.21255949.
Schools
An analysis of school absences in England during the Covid-19 pandemic
Emma R Southall, Alex Holmes, Edward M Hill, Benjamin D Atkins, Trystan Leng, Robin N Thompson, Louise Dyson, Matt J Keeling, Michael J Tildesley. (2021)
BMC Medicine, 19: 137. doi:10.1186/s12916-021-01990-x.The impact of school reopening on the spread of COVID-19 in England
Matt J Keeling, Michael J Tildesley, Benjamin D Atkins, Bridget Penman, Emma Southall, Glen Guyver-Fletcher, Alex Holmes, Hector McKimm, Erin E Gorsich, Edward M Hill, Louise Dyson. (2021)
Phil Trans B, 376(1829): 20200261. doi:10.1098/rstb.2020.0261.Assessing the impact of secondary school reopening strategies on within-school COVID-19 transmission and absences: a modelling study.
Trystan Leng, Edward M Hill, Robin N Thompson, Michael J Tildesley, Matt J Keeling, Louise Dyson. (2021)
medRxiv. doi:10.1101/2021.02.12.21251484.Quantifying within-school SARS-CoV-2 transmission and the impact of lateral flow testing in secondary schools in England.
Trystan Leng, Edward M Hill, Alex Holmes, Emma Southall, Robin N Thompson, Michael J Tildesley, Matt J Keeling, Louise Dyson. (2022)
Nature Communications, 13: 1106. doi:10.1038/s41467-022-28731-9.
Vaccination
Modelling optimal vaccination strategy for SARS-CoV-2 in the UK
Sam Moore, Edward M Hill, Louise Dyson, Michael J Tildesley, Matt J Keeling. (2021)
PLoS Comput Biol, 17(5): e1008849. doi:10.1371/journal.pcbi.1008849.Vaccination and non-pharmaceutical interventions for COVID-19: a mathematical modelling study
Sam Moore, Edward M Hill, Michael J Tildesley, Louise Dyson, Matt J Keeling. (2021)
Lancet Infectious Diseases, 21(6): 793-802. doi:10.1016/S1473-3099(21)00143-2.Comparison between one and two dose SARS-CoV-2 vaccine prioritization for a fixed number of vaccine doses
Edward M Hill, Matt J Keeling. (2021)
J. R. Soc. Interface, 18(182): 20210214. doi:10.1098/rsif.2021.0214.Waning, Boosting and a Path to Endemicity for SARS-CoV-2
Matt J Keeling, Amy C Thomas, Edward M Hill, Robin N Thompson, Louise Dyson, Michael J Tildesley, Sam Moore. (2021)
medRxiv. doi:10.1101/2021.11.05.21265977.The impacts of increased global vaccine sharing on the COVID-19 pandemic; a retrospective modelling study
Sam Moore, Edward M Hill, Louise Dyson, Michael J Tildesley, Matt J Keeling. (2022)
medRxiv. doi:10.1101/2022.01.26.22269877.
Variants of Concern (VOCs)
Short-term Projections based on Early Omicron Variant Dynamics in England
Matt J Keeling, Ellen Brooks-Pollock, Robert J Challen, Leon Danon, Louise Dyson, Julia R Gog, Laura Guzman-Rincon, Edward M Hill, Lorenzo M Pellis, Jonathan M Read, Michael J Tildesley. (2021)
medRxiv. doi:10.1101/2021.12.30.21268307.Possible future waves of SARS-CoV-2 infection generated by variants of concern with a range of characteristics
Louise Dyson*, Edward M Hill*, Sam Moore, Jacob Curran-Sebastian, Michael J Tildesley, Katrina A Lythgoe, Thomas House, Lorenzo Pellis, Matt J Keeling. (2021)
Nature Communications, 12: 5730. doi:10.1038/s41467-021-25915-7.
* denotes joint first authorsEarly epidemiological signatures of novel SARS-CoV-2 variants: establishment of B.1.617.2 in England
Robert Challen et al. (2021)
medRxiv. doi:10.1101/2021.06.05.21258365.
Workplaces
- A network modelling approach to assess non-pharmaceutical disease controls in a worker population: An application to SARS-CoV-2
Edward M Hill*, Benjamin D Atkins*, Matt J Keeling, Louise Dyson, Michael J Tildesley. (2021)
PLoS Comput Biol, 17(6): e1009058. doi:10.1371/journal.pcbi.1009058.
* denotes joint first authors